| Ident. | Authors (with country if any) | Title |
|---|
| 000640 (2019) |
Yongzhi Yang [République populaire de Chine] ; Ying Li [République populaire de Chine] ; Qiao Chen [République populaire de Chine] ; Yongshuai Sun [République populaire de Chine] ; Zhiqiang Lu [République populaire de Chine] | WGDdetector: a pipeline for detecting whole genome duplication events using the genome or transcriptome annotations. |
| 000C25 (2018) |
Pedro Seoane [Espagne] ; Marina Espigares [Espagne] ; Rosario Carmona [Espagne] ; Álvaro Polonio [Espagne] ; Julia Quintana [États-Unis] ; Enrico Cretazzo [Espagne] ; Josefina Bota [Espagne] ; Alejandro Pérez-García [Espagne] ; Juan De Dios Alché [Espagne] ; Luis G Mez [Espagne] ; M Gonzalo Claros [Espagne] | TransFlow: a modular framework for assembling and assessing accurate de novo transcriptomes in non-model organisms. |
| 000D96 (2018) |
Thomas Dias-Alves [France] ; Julien Mairal [France] ; Michael G B. Blum [France] | Loter: A Software Package to Infer Local Ancestry for a Wide Range of Species. |
| 001115 (2017) |
W N Hu [République populaire de Chine] ; L. Zhu [République populaire de Chine] ; L F Xie [République populaire de Chine] ; F Z Zhang [République populaire de Chine] ; M Y Bai [République populaire de Chine] ; N. Wang [République populaire de Chine] ; Z W Sun [République populaire de Chine] | [Correlation between the visiting rate of patients with allergic rhinitis and airborne pollen concentrations in Beijing in recent 3 years]. |
| 001286 (2017) |
Soile Jokipii-Lukkari [Suède] ; David Sundell [Suède] ; Ove Nilsson [Suède] ; Torgeir R. Hvidsten [Suède, Norvège] ; Nathaniel R. Street [Suède] ; Hannele Tuominen [Suède] | NorWood: a gene expression resource for evo-devo studies of conifer wood development. |
| 001842 (2016) |
Marcela Karey Tello-Ruiz [États-Unis] ; Joshua Stein [États-Unis] ; Sharon Wei [États-Unis] ; Ken Youens-Clark [États-Unis] ; Pankaj Jaiswal [États-Unis] ; Doreen Ware [États-Unis] | Gramene: A Resource for Comparative Analysis of Plants Genomes and Pathways. |
| 002058 (2014) |
Luis Garcia-Torres [Espagne] ; Juan J. Caballero-Novella [Espagne] ; David G Mez-Cand N [Espagne] ; Ana Isabel De-Castro [Espagne] | Semi-automatic normalization of multitemporal remote images based on vegetative pseudo-invariant features. |
| 002177 (2014) |
Hou-Ling Wang [République populaire de Chine] ; Jinhuan Chen ; Qianqian Tian ; Shu Wang ; Xinli Xia ; Weilun Yin | Identification and validation of reference genes for Populus euphratica gene expression analysis during abiotic stresses by quantitative real-time PCR. |
| 002361 (2014) |
Maria Sighicelli [Italie] ; Massimiliano Guarneri | Assessing the poplar photochemical response to high zinc concentrations by image processing and statistical approach. |
| 002384 (2014) |
Erik K. Malm [Suède] ; Vaibhav Srivastava [Suède] ; Gustav Sundqvist [Suède] ; Vincent Bulone [Suède] | APP: an Automated Proteomics Pipeline for the analysis of mass spectrometry data based on multiple open access tools. |
| 002435 (2013) |
Keiichi Mochida [Japon] ; Takuhiro Yoshida ; Tetsuya Sakurai ; Kazuko Yamaguchi-Shinozaki ; Kazuo Shinozaki ; Lam-Son Phan Tran | TreeTFDB: an integrative database of the transcription factors from six economically important tree crops for functional predictions and comparative and functional genomics. |
| 002527 (2013) |
Eli Rodgers-Melnick [États-Unis] ; Mark Culp ; Stephen P. Difazio | Predicting whole genome protein interaction networks from primary sequence data in model and non-model organisms using ENTS. |
| 002543 (2013) |
Bhanu Rekapalli [États-Unis] ; Paul Giblock ; Christopher Reardon | PoPLAR: Portal for Petascale Lifescience Applications and Research. |
| 002728 (2013) |
Arturo Magana-Mora [Arabie saoudite] ; Haitham Ashoor ; Boris R. Jankovic ; Allan Kamau ; Karim Awara ; Rajesh Chowdhary ; John A C. Archer ; Vladimir B. Bajic | Dragon TIS Spotter: an Arabidopsis-derived predictor of translation initiation sites in plants. |
| 002747 (2013) |
Hong-Qiang Wang [République populaire de Chine] ; Chung-Jui Tsai | CorSig: a general framework for estimating statistical significance of correlation and its application to gene co-expression analysis. |
| 002A01 (2012) |
Jun Li [États-Unis] ; Xinbin Dai ; Tingsong Liu ; Patrick Xuechun Zhao | LegumeIP: an integrative database for comparative genomics and transcriptomics of model legumes. |
| 002A70 (2012) |
Chunfang Zheng [Canada] ; David Sankoff | Gene order in rosid phylogeny, inferred from pairwise syntenies among extant genomes. |
| 002A99 (2012) |
Emily A. Pettengill [États-Unis] ; Cécile Parmentier-Line ; Gary D. Coleman | Evaluation of qPCR reference genes in two genotypes of Populus for use in photoperiod and low-temperature studies. |
| 002B49 (2012) |
Laura Baxter [Royaume-Uni] ; Aleksey Jironkin ; Richard Hickman ; Jay Moore ; Christopher Barrington ; Peter Krusche ; Nigel P. Dyer ; Vicky Buchanan-Wollaston ; Alexander Tiskin ; Jim Beynon ; Katherine Denby ; Sascha Ott | Conserved noncoding sequences highlight shared components of regulatory networks in dicotyledonous plants. |
| 002B78 (2012) |
Peter E. Larsen [États-Unis] ; Frank R. Collart | BowStrap v1.0: Assigning statistical significance to expressed genes using short-read transcriptome data. |
| 002B91 (2012) |
Rohan V. Patel [Canada] ; Hardeep K. Nahal ; Robert Breit ; Nicholas J. Provart | BAR expressolog identification: expression profile similarity ranking of homologous genes in plant species. |
| 002D37 (2011) |
Sylvain Delagrange [Canada] ; Pascal Rochon | Reconstruction and analysis of a deciduous sapling using digital photographs or terrestrial-LiDAR technology. |
| 002D55 (2011) |
Marek Mutwil [Allemagne] ; Sebastian Klie ; Takayuki Tohge ; Federico M. Giorgi ; Olivia Wilkins ; Malcolm M. Campbell ; Alisdair R. Fernie ; Björn Usadel ; Zoran Nikoloski ; Staffan Persson | PlaNet: combined sequence and expression comparisons across plant networks derived from seven species. |
| 002D84 (2011) |
Chunfa Tong [États-Unis] ; Bo Zhang ; Zhong Wang ; Meng Xu ; Xiaoming Pang ; Jingna Si ; Minren Huang ; Rongling Wu | Multiallelic epistatic model for an out-bred cross and mapping algorithm of interactive quantitative trait loci. |
| 002D93 (2011) |
Bin Cai [République populaire de Chine] ; Xiaohan Yang ; Gerald A. Tuskan ; Zong-Ming Cheng | MicroSyn: a user friendly tool for detection of microsynteny in a gene family. |
| 003024 (2011) |
Chunfa Tong [République populaire de Chine] ; Zhong Wang ; Bo Zhang ; Jisen Shi ; Rongling Wu | 3FunMap: full-sib family functional mapping of dynamic traits. |
| 003177 (2010) |
Zhenhai Zhang [République populaire de Chine] ; Jingyin Yu ; Daofeng Li ; Zuyong Zhang ; Fengxia Liu ; Xin Zhou ; Tao Wang ; Yi Ling ; Zhen Su | PMRD: plant microRNA database. |
| 003202 (2010) |
Keiichi Mochida [Japon] ; Takuhiro Yoshida ; Tetsuya Sakurai ; Kazuko Yamaguchi-Shinozaki ; Kazuo Shinozaki ; Lam-Son Phan Tran | LegumeTFDB: an integrative database of Glycine max, Lotus japonicus and Medicago truncatula transcription factors. |
| 003485 (2009) |
Leming Zhou [États-Unis] ; Mihaela Pertea ; Arthur L. Delcher ; Liliana Florea | Sim4cc: a cross-species spliced alignment program. |
| 003856 (2008) |
P R K. Ingvarsson [Suède] | Multilocus patterns of nucleotide polymorphism and the demographic history of Populus tremula. |
| 003862 (2008) |
Ying Ouyang [États-Unis] | Modeling the mechanisms for uptake and translocation of dioxane in a soil-plant ecosystem with STELLA. |
| 003922 (2008) |
Eric Lyons [États-Unis] ; Brent Pedersen ; Josh Kane ; Maqsudul Alam ; Ray Ming ; Haibao Tang ; Xiyin Wang ; John Bowers ; Andrew Paterson ; Damon Lisch ; Michael Freeling | Finding and comparing syntenic regions among Arabidopsis and the outgroups papaya, poplar, and grape: CoGe with rosids. |
| 003995 (2008) |
Huaizhen Qin [États-Unis] ; Tao Feng ; Scott A. Harding ; Chung-Jui Tsai ; Shuanglin Zhang | An efficient method to identify differentially expressed genes in microarray experiments. |
| 003A63 (2007) |
T C Mockler [États-Unis] ; T P Michael ; H D Priest ; R. Shen ; C M Sullivan ; S A Givan ; C. Mcentee ; S A Kay ; J. Chory | The DIURNAL project: DIURNAL and circadian expression profiling, model-based pattern matching, and promoter analysis. |
| 003A75 (2007) |
Ying Ouyang [États-Unis] ; Cheng He Huang ; Dong Yi Huang ; Dian Lin ; Lihua Cui | Simulating uptake and transport of TNT by plants using STELLA. |
| 003B26 (2007) |
Shuxian Li [République populaire de Chine] ; Tongming Yin | Map and analysis of microsatellites in the genome of Populus: the first sequenced perennial plant. |
| 003D61 (2006) |
Joanna C. Chiu [États-Unis] ; Ernest K. Lee ; Mary G. Egan ; Indra Neil Sarkar ; Gloria M. Coruzzi ; Rob Desalle | OrthologID: automation of genome-scale ortholog identification within a parsimony framework. |
| 003E38 (2006) |
Marc N. Offman [Royaume-Uni] ; Paul W. Fitzjohn ; Paul A. Bates | Developing a move-set for protein model refinement. |
| 003E67 (2006) |
Christopher D. Town [États-Unis] | Annotating the genome of Medicago truncatula. |
| 003F75 (2005) |
Gaurab Mukherjee [Royaume-Uni] ; Niran Abeygunawardena ; Helen Parkinson ; Sergio Contrino ; Steffen Durinck ; Anna Farne ; Ele Holloway ; Per Lilja ; Yves Moreau ; Ahmet Oezcimen ; Tim Rayner ; Anjan Sharma ; Alvis Brazma ; Ugis Sarkans ; Mohammadreza Shojatalab | Plant-based microarray data at the European Bioinformatics Institute. Introducing AtMIAMExpress, a submission tool for Arabidopsis gene expression data to ArrayExpress. |
| 004024 (2005) |
George S. Yang [Canada] ; Jeffery M. Stott ; Duane Smailus ; Sarah A. Barber ; Miruna Balasundaram ; Marco A. Marra ; Robert A. Holt | High-throughput sequencing: a failure mode analysis. |
| 004033 (2005) |
Nathalie Pavy [Canada] ; Charles Paule ; Lee Parsons ; John A. Crow ; Marie-Josee Morency ; Janice Cooke ; James E. Johnson ; Etienne Noumen ; Carine Guillet-Claude ; Yaron Butterfield ; Sarah Barber ; George Yang ; Jerry Liu ; Jeff Stott ; Robert Kirkpatrick ; Asim Siddiqui ; Robert Holt ; Marco Marra ; Armand Seguin ; Ernest Retzel ; Jean Bousquet (allergologue) [France] ; John Mackay | Generation, annotation, analysis and database integration of 16,500 white spruce EST clusters. |
| 004384 (2003) |
Daniel R. Fuhrmann [États-Unis] ; Martin I. Krzywinski ; Readman Chiu ; Parvaneh Saeedi ; Jacqueline E. Schein ; Ian E. Bosdet ; Asif Chinwalla ; Ladeana W. Hillier ; Robert H. Waterston ; John D. Mcpherson ; Steven J M. Jones ; Marco A. Marra | Software for automated analysis of DNA fingerprinting gels. |
| 004426 (2003) |
Christopher D. Fjell [Canada] ; Ian Bosdet ; Jacqueline E. Schein ; Steven J M. Jones ; Marco A. Marra | Internet Contig Explorer (iCE)--a tool for visualizing clone fingerprint maps. |
| 004742 (2001) |
D R Mcilveen-Wright [Royaume-Uni] ; B C Williams ; J T Mcmullan | A re-appraisal of wood-fired combustion. |
| 004937 (1998) |
D N Thompson [États-Unis] ; B R Hames ; C A Reddy ; H E Grethlein | In vitro degradation of natural insoluble lignin in aqueous media by the extracellular peroxidases of Phanerochaete chrysosporium. |
| 004958 (1998) |
D C Pearson [États-Unis] ; E L Gross | Brownian dynamics study of the interaction between plastocyanin and cytochrome f. |
